Type: Package
Package: cxr
Title: A Toolbox for Modelling Species Coexistence in R
Version: 1.1.1
Authors@R: c(
    person("David", "Garcia-Callejas", , "david.garcia.callejas@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-6982-476X")),
    person("Ignasi", "Bartomeus", , "nacho.bartomeus@gmail.com", role = "aut",
           comment = c(ORCID = "0000-0001-7893-4389")),
    person("Oscar", "Godoy", , "ogodoy.re@gmail.com", role = "aut",
           comment = c(ORCID = "0000-0003-4988-6626")),
    person("Maxime", "Lancelot", role = "ctb"),
    person("Maria", "Paniw", role = "ctb")
  )
Description: Recent developments in modern coexistence theory have
        advanced our understanding on how species are able to persist
        and co-occur with other species at varying abundances. However,
        applying this mathematical framework to empirical data is still
        challenging, precluding a larger adoption of the theoretical
        tools developed by empiricists. This package provides a
        complete toolbox for modelling interaction effects between
        species, and calculate fitness and niche differences.  The
        functions are flexible, may accept covariates, and different
        fitting algorithms can be used.  A full description of the
        underlying methods is available in García-Callejas, D., Godoy,
        O., and Bartomeus, I. (2020) <doi:10.1111/2041-210X.13443>.
        Furthermore, the package provides a series of functions to
        calculate dynamics for stage-structured populations across
        sites.
License: MIT + file LICENSE
URL: https://github.com/RadicalCommEcol/cxr
BugReports: https://github.com/RadicalCommEcol/cxr/issues
Depends: R (>= 3.5)
Imports: Matrix, mvtnorm, optimx, stats
Suggests: BB, DEoptimR, dfoptim, dplyr, GenSA, ggplot2, knitr,
        magrittr, minqa, nloptr, rmarkdown, stringr, testthat (>=
        0.8.0), tidyr, ucminf
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake
Repository: https://radicalcommecol.r-universe.dev
Date/Publication: 2025-02-05 10:32:22 UTC
RemoteUrl: https://github.com/radicalcommecol/cxr
RemoteRef: HEAD
RemoteSha: f842189573d6873ea2b15e79fd971d7f8a4ef304
NeedsCompilation: no
Packaged: 2026-06-12 08:47:38 UTC; root
Author: David Garcia-Callejas [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-6982-476X>),
  Ignasi Bartomeus [aut] (ORCID: <https://orcid.org/0000-0001-7893-4389>),
  Oscar Godoy [aut] (ORCID: <https://orcid.org/0000-0003-4988-6626>),
  Maxime Lancelot [ctb],
  Maria Paniw [ctb]
Maintainer: David Garcia-Callejas <david.garcia.callejas@gmail.com>